Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015929830.1_cds_XP_016477043.1_68816
CDS Infomation

[gene=LOC107798545] [db_xref=GeneID:107798545] [protein=small RNA degrading nuclease 1-like] [protein_id=XP_016477043.1] [location=join(76761..76796,77124..77306,77400..77489,78176..78244,78662..78805,78961..79077,79187..79256,79521..79621,79970..80104,80191..80298,81348..81452,81588..81923)] [gbkey=CDS]
Sequence

ATGGATTTGAAGTTTGCCTCCTCAGCGAAGAAAGAGGTTCTAGTCGAAATTGTCAAGTTA
GCTCAAAAGCGGCAGATGAAAGGGAGTAGCGGAGGGTGGAAAGATTTTTTGAGATCGTAC
GACAAGAAGTTAGGTGTTAGCTTGAGTGACCCGTCGAAGAGGTCCGTTGATGATTTGCTT
GCGTTTTTGAAGACGTTTAGCCAAGAGGATGACATAAAGCTTTTTAAAAAGGTGTTTCAA
TGCTATTCCAATCGAGAGGCTGTAGAGAAGCTTCAGAAAAAATCCCCGGATAGTGAATCC
GCCGAACAGGGACTGGTTCGTTTAACTTTTGAGCACCCTCAATATCCGACAGAGTACTCG
TTTCCATCACATGAGGAGGGCTGGTTAGTCATGAGAAGGACTAAAAAGTCTAATTTCGTA
AAATCAAAAAAGGCAATGATTGCAATTGATTGCGAAATGGTTCTTTGCCAAGATGGAACC
GAAGCTTTAGTCAGAATCTGCGCTGTGGATGATAAGTTGGAGGTTAAACTCAATGAATTT
GTGAATCCAAACAAACCAATTGCAGACTACAGAACTGAGATTACTGGAATAACCGCAGGA
GATTTAGATGGAGTTTCTTGTTCATTGGCTGATGTACAGATGTCCATGAAGAAGCTATTA
TCACATGGAACCATATTGATTGGCCACAGTTTACACAATGACCTTCGTGCTTTGAAGATA
GATCATGCAAGAGTGATTGACACATCTTATGTCTTCAAATATTGGGATCAGCCATCTAAT
AGAAGACCTTCTTTAAGTAATTTGTGTAAGTCTGTGTTAGGTTTTGAACTTCGAAAGAAG
GACTCTCCACATAATTGTCTGGATGACGCATGCACTGCAATGAAACTTGTTCTTGCCAAG
ATTGAACGTGGAGTTGATTGTATCATACCGTTTGTTCGTGAGGAGGTGCAAGAGCCCAAG
ATTGCGAAGCTACTTGTCCACAGAATACCAGTGGCTCTTCATAGCGAAGAGTTACACAAA
GTTGTTCCTGGGGACTTTACCATAGAAGTTAAGGCTAATAAAAAAGGGCAAGCAGACAAG
TATTCTGCCTCTGTCAATTTCAAAAATCAGCAAGAGGCAAATGAGGCATTTGAGAAGCTT
GAAGGCAACCAAGATAAGGATCCTGTCGGACGACCACAAAAGCTCGTTTCATTTCATCTT
GATTCCGGTGTATCAGGGGTTTTGTGTGTTTGTAAGATGGCTCCCAATAACTTAGCTATA
GAGGTTAACCCAATGAAGAGGTCATCTGAAGATGAAGAGACCGTGAGAGAGCCAAAGAAA
CCGAGAATAGAAGACCAATGTGCAGAGCTCAAGGAGGCTGGTGCAGGTTGTAATCAGTGT
GAAACGCATGTGAAGGAGATTGAGAGGCTAAAGAAAGAATTAAGCCACAGAGACGAAGAA
ATCTCCAACTTGAACAAACTCATTGTTAACCTTGTGAGAAAACAAGGATTGTAA

Peptide Sequence

PEP ID

XP_016477043.1
PEP Infomation

PREDICTED: small RNA degrading nuclease 1-like [Nicotiana tabacum]
Sequence

MDLKFASSAKKEVLVEIVKLAQKRQMKGSSGGWKDFLRSYDKKLGVSLSDPSKRSVDDLL
AFLKTFSQEDDIKLFKKVFQCYSNREAVEKLQKKSPDSESAEQGLVRLTFEHPQYPTEYS
FPSHEEGWLVMRRTKKSNFVKSKKAMIAIDCEMVLCQDGTEALVRICAVDDKLEVKLNEF
VNPNKPIADYRTEITGITAGDLDGVSCSLADVQMSMKKLLSHGTILIGHSLHNDLRALKI
DHARVIDTSYVFKYWDQPSNRRPSLSNLCKSVLGFELRKKDSPHNCLDDACTAMKLVLAK
IERGVDCIIPFVREEVQEPKIAKLLVHRIPVALHSEELHKVVPGDFTIEVKANKKGQADK
YSASVNFKNQQEANEAFEKLEGNQDKDPVGRPQKLVSFHLDSGVSGVLCVCKMAPNNLAI
EVNPMKRSSEDEETVREPKKPRIEDQCAELKEAGAGCNQCETHVKEIERLKKELSHRDEE
ISNLNKLIVNLVRKQGL

Transcript Sequence

Gene sequence data has not been registered.